Tumor tissue mutation analysis

JT Jeanne Tie
YW Yuxuan Wang
JC Joshua Cohen
LL Lu Li
WH Wei Hong
MC Michael Christie
HW Hui Li Wong
SK Suzanne Kosmider
RW Rachel Wong
BT Benjamin Thomson
JC Julian Choi
AF Adrian Fox
KF Kathryn Field
MB Matthew Burge
JS Jenny Shannon
DK Dusan Kotasek
NT Niall C. Tebbutt
CK Christos Karapetis
CU Craig Underhill
AH Andrew Haydon
JS Joy Schaeffer
JP Janine Ptak
CT Cristian Tomasetti
NP Nicholas Papadopoulos
KK Kenneth W. Kinzler
BV Bert Vogelstein
PG Peter Gibbs
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Formalin-fixed paraffin-embedded tumor tissue from the resected liver metastasis or primary tumor (where tumor tissue from liver metastasis was not available or inadequate for analysis) were analysed for somatic mutations in 15 genes recurrently mutated in CRC (SMAD4, TP53, AKT1, APC, BRAF, CTNNB1, ERBB3, FBXW7, HRAS, KRAS, NRAS, PIK3CA, PPP2R1A, RNF43, POLE). Tumor sections were macrodissected under a dissecting microscope to ensure a neoplastic cellularity of >30%. DNA was purified with a Qiagen FFPE Kit (Qiagen cat #56494). Primers were designed and sequencing results analyzed as previously described [16].

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