Tractography

IT Irvin Teh
DM Darryl McClymont
MZ Marie-Christine Zdora
HW Hannah J. Whittington
VD Valentina Davidoiu
JL Jack Lee
CL Craig A. Lygate
CR Christoph Rau
IZ Irene Zanette
JS Jürgen E. Schneider
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Tracking of DTI and STSRI eigenvectors v 1, v 2 and v 3 was performed in the whole heart using Diffusion Toolkit [41]. Here we refer to ‘tracks’ as streamlines connecting contiguous tensors with similar alignment. Tracks were generated from all voxels within the segmented heart volume, using a 2nd order Runge–Kutta method, spline filter, an angle threshold of 30° and no FA threshold. A minimum length threshold of 0.5 mm was used for v 1,DT/v 3,ST tracks. Tracks are displayed in the whole heart and in a mid-ventricular short-axis slice using Trackvis [41], and colour-coded by orientation: apico-basal (red), anterior-posterior (green) and lateral-septal (blue).

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