Southern Blot and Gene Expression Analysis

NO Ning Ouyang
XS Xuewu Sun
YT Yanning Tan
ZS Zhizhong Sun
DY Dong Yu
HL Hai Liu
CL Citao Liu
LL Ling Liu
LJ Lu Jin
BZ Bingran Zhao
DY Dingyang Yuan
MD Meijuan Duan
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For southern blot, leaf genomic DNA was extracted using the CTAB method and purified with the EasyPure® Plant Genomic DNA Kit (Transgenbiotech, #EE111-01, China). Thereafter, 5 μg of purified genomic DNA was digested with BamHI and separated by electrophoresis in a 1% agarose gel and then transferred to a Hybond N+ nylon membrane (Amersham, #RPN303B, UK). The pSAG12-specific probe (950 bp) was labeled with DIG-dUTP in PCR, using the PCR DIG Probe Synthesis Kit (Roche, # 11636090910, Switzerland). Subsequent hybridization was performed using the DIG High Prime DNA Labeling and Detection Starter Kit I (Roche, # 11745832910, Switzerland) according to standard protocols.

Gene expression level was detected using a q-RT PCR assay. Total RNA was extracted using the TriZol reagent (Invitrogen, #15596026, Germany) and treated with DNase I (Thermo, #EN0521, USA) to avoid genomic DNA contamination. First-strand cDNA was synthesized from each preparation of total RNA (1 μg/reaction) using the RevertAid First-Strand cDNA Synthesis Kit (Thermo Fisher Scientific, #K1622, USA) and an oligo-dT primer. Real-time quantitative PCR was performed using a LightCycler® 480 II system (Roche) with PowerUp™ SYBR® Green Master Mix (Thermo Fisher Scientific, #A25742, USA) in accordance with the manufacturer's instructions. UBQ5 was used as the internal control gene with the forward primers 5′-GTATTCCACCTGTTCAGC-3′ and the reverse primers 5′-ACCTTCAATGTTGTAATCCTT-3′. The forward and reverse primers for the RAmy1A gene were 5′-TCCTCATCGTCCTCCTTG-3′ and 5′-ACTCCCAGTTGAATCCCT-3′, respectively.

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