SNP validation by Sanger sequencing

ZR Zi-Lin Ren
JZ Jia-Rong Zhang
XZ Xiao-Meng Zhang
XL Xu Liu
YL Yan-Feng Lin
HB Hua Bai
MW Meng-Chun Wang
FC Feng Cheng
JL Jin-Ding Liu
PL Peng Li
LK Lei Kong
XB Xiao-Chen Bo
SW Sheng-Qi Wang
MN Ming Ni
JY Jiang-Wei Yan
ask Ask a question
Favorite

We used Sanger sequencing for the genotyping of SNP loci rs1493232, rs338882, and rs1357617. Primer3 (v0.4.0) [33, 34] was used to design the PCR primer pairs for rs1493232 and rs338882. The PCR primers for rs1357617 were from Zhang et al. [35]. The primer pair sequences are provided in Table S1. PCR was performed with TaKaPa Taq hot start version (Takara Bio Company, Japan) and the following thermal cycling regimen: 180 s at 98 °C, followed by 35 cycles of 30 s at 98 °C, 30 s at 62 °C, and 45 s at 72 °C. Sanger sequencing was conducted by Sangon Biotech (Shanghai, China).

Do you have any questions about this protocol?

Post your question to gather feedback from the community. We will also invite the authors of this article to respond.

post Post a Question
0 Q&A