Gene expression quantification and normalization

SL Sia Viborg Lindskrog
FP Frederik Prip
PL Philippe Lamy
AT Ann Taber
CG Clarice S. Groeneveld
KB Karin Birkenkamp-Demtröder
JJ Jørgen Bjerggaard Jensen
TS Trine Strandgaard
IN Iver Nordentoft
EC Emil Christensen
MS Mateo Sokac
NB Nicolai J. Birkbak
LM Lasse Maretty
GH Gregers G. Hermann
AP Astrid C. Petersen
VW Veronika Weyerer
MG Marc-Oliver Grimm
MH Marcus Horstmann
GS Gottfrid Sjödahl
MH Mattias Höglund
TS Torben Steiniche
KM Karin Mogensen
AR Aurélien de Reyniès
RN Roman Nawroth
BJ Brian Jordan
XL Xiaoqi Lin
DD Dejan Dragicevic
DW Douglas G. Ward
AG Anshita Goel
CH Carolyn D. Hurst
JR Jay D. Raman
JW Joshua I. Warrick
US Ulrika Segersten
DS Danijel Sikic
KK Kim E. M. van Kessel
TM Tobias Maurer
JM Joshua J. Meeks
DD David J. DeGraff
RB Richard T. Bryan
MK Margaret A. Knowles
TS Tatjana Simic
AH Arndt Hartmann
EZ Ellen C. Zwarthoff
PM Per-Uno Malmström
NM Núria Malats
FR Francisco X. Real
LD Lars Dyrskjøt
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We remapped and requantified all new and previously generated expression data. Salmon67 was used to quantify the amount of each transcript using annotation from GRCh38. The R packages tximport and edgeR were used to summarize the expression at gene-level and normalize the data, respectively.

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