2.4. Validation of differentially expressed circular RNAs by Sanger sequencing and qRT‐PCR

AR Arunagiri Kuha Deva Magendhra Rao
VA Vittal Rangan Arvinden
DR Deepa Ramasamy
KP Krishna Patel
BM Balaiah Meenakumari
PR Priya Ramanathan
SS Shirley Sundersingh
VS Velusami Sridevi
TR Thangarajan Rajkumar
ZH Zdenko Herceg
HG Harsha Gowda
SM Samson Mani
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The following primer sequences were used to amplify PCR fragments of three circular RNAs hsa_circ_0006743Fwd 5′‐GCCTGCATTGGTGTATGT‐3′; Rev 5′‐GCCCAGATTAAGTGGTATTCC‐3′, hsa_circ_0002496 Fwd 5′‐CTCATGAAGATTTGGCCTACT‐3′; Rev 5′‐TTACTACACAAGCAGTGCATT‐3′, hsa_circ_0023990 Fwd 5′‐TCTACATATGCAATAAGCTAGGATT‐3′; Rev 5′‐ TCGGAGGTAAGCCAAGAG‐3′ and amplifying Glyceraldehyde 3‐phosphate dehydrogenase gene fragment as internal reference using the primer sequences GAPDH Fwd 5′‐TGCACCACCAACTGCTTAGC‐3′; GAPDH Rev 5′‐ GGCATGGACTGTGGTCATGAG‐3′. Using GoTaq SYBR green master mix (Promega Corporation), circular RNA expression was validated using the above set of primers in Quantstudio 12K Flex (Applied Biosystems, Thermo Fisher Scientific) encompassing the junction site to ensure specificity. Genetic Analyzer 3500 DX (Applied Biosystems, Thermo Fisher Scientific) was used to confirm circular RNA sequences.

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