mRNA decapping assay

TX Tian‐Liang Xia
XL Xingyang Li
XW Xueping Wang
YZ Yun‐Jia Zhu
HZ Hua Zhang
WC Weisheng Cheng
MC Mei‐Ling Chen
YY Ying Ye
YL Yan Li
AZ Ao Zhang
DD Dan‐Ling Dai
QZ Qian‐Ying Zhu
LY Li Yuan
JZ Jian Zheng
HH Huilin Huang
SC Si‐Qi Chen
ZX Zhi‐Wen Xiao
HW Hong‐Bo Wang
GR Gaurab Roy
QZ Qian Zhong
DL Dongxin Lin
YZ Yi‐Xin Zeng
JW Jinkai Wang
BZ Bo Zhao
BG Benjamin E Gewurz
JC Jianjun Chen
ZZ Zhixiang Zuo
MZ Mu‐Sheng Zeng
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C666 cells were plated into 6‐well plates for 24 h and transfected with YTHDF1‐specific or control siRNAs. After 24 h, RNA was extracted from the transfected cells, and the presence of the 5′‐cap was determined as described previously (Du et al, 2016). Briefly, the cytoplasmic RNA samples (3 µg) were treated with three units of 5′‐phosphate‐dependent exonuclease XRN1 (New England BioLabs, USA) for 2 h at 37°C according to the manufacturer’s protocol. The treated RNAs were then purified overnight by ethanol precipitation and subjected to qPCR along with the total RNA sample. Finally, the ratios of capped RNA were calculated by dividing the RNA expression in XRN1‐treated samples by that in total RNA samples.

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