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4.10. The Functional Analysis of Protein and DEP

WX Wei Xia
ZC Zhipeng Cao
XZ Xiaoyu Zhang
LG Lina Gao
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GO and InterPro (IPR) functional analysis were conducted using the interproscan program against the non-redundant protein database (including Pfam, PRINTS, ProDom, SMART, ProSite, PANTHER) and the databases of COG (Clusters of Orthologous Groups) and KEGG were used to analyze the protein family and pathways. DPEs were used for Volcanic map analysis, cluster heat map analysis and enrichment analysis of GO, IPR and KEGG. The probable protein-protein interactions were predicted using the STRING-db server (http://string.embl.de/, accessed on 31 May 2020). The mass spectrometry proteomics data have been deposited to the ProteomeXchange Consortium (http://proteomecentral.proteomexchange.org, accessed on 31 May 2020) via the iProX partner repository with the dataset identifier PXD019233.

Copyright and License information:  ©2021 by the authors.
Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/).

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