2.5. Quantitative Polymerase Chain Reaction (qPCR) Validation of Differentially Expressed Genes

JM Jason T. Magnuson
KH Kara E. Huff Hartz
CF Corie A. Fulton
ML Michael J. Lydy
DS Daniel Schlenk
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To validate expression profiles of DEGs determined from RNA sequencing analysis, qPCR was conducted on select genes involved in the top predicted pathways altered following bifenthrin treatment. RNA was diluted to 1 µg and reverse transcribed to cDNA using an iScript Reverse Transcription Supermix kit (Bio-Rad, Hercules, CA, USA). To perform qPCR, a 20 µL reaction was performed, with an input concentration of 100 ng cDNA and 10 µM of primer pairs (csf1, cbs, ptafr, and mtap; Supplementary Table S1). All qPCR reactions were conducted in triplicate and run on a Bio-Rad CFX Connect Real-Time PCR Detection System and followed the same thermal cycling conditions as previously described [23]. To determine expression fold change between treatment and control groups, 2−ΔΔCt was used [36], with all results normalized to the housekeeping gene, ef1α, as no significant difference in expression was observed between treatments.

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