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Single Sample Gene Set Enrichment Analysis (ssGSEA)
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The ssGSEA method was utilized to quantify the enrichment scores of immune cells (aDCs, B cells, CD8+ T cells, DCs, iDCs, macrophages, mast cells, neutrophils, NK cells, pDCs, T helper cells, Tfh, Th1 cells, Th2 cells, TIL and Treg), and immune functions (APC co-inhibition, APC co-stimulation, CCR, check-point cytolytic activity, HLA, inflammation-promoting, MHC class I, parainflammation, T cell co-inhibition, T cell co-stimulation, type I IFN response and type II IFN response) for each ovarian cancer specimen (12).
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