Demultiplexing and Trimming

PW Pamela Wiener
CR Christelle Robert
AA Abulgasim Ahbara
MS Mazdak Salavati
AA Ayele Abebe
AK Adebabay Kebede
DW David Wragg
JF Juliane Friedrich
DV Deepali Vasoya
DH David A Hume
AD Appolinaire Djikeng
MW Mick Watson
JP James G D Prendergast
OH Olivier Hanotte
JM Joram M Mwacharo
EC Emily L Clark
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Demultiplexing was performed using bcl2fastq (v.2.17.1.14), allowing 1 mismatch when assigning reads to barcodes. Adapters (Read1:AGATCGGAAGAGCACACGTCTGAACTCCAGTCA, Read2:AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGT) were trimmed during the demultiplexing process. After trimming and demultiplexing, two compressed FASTQ files (“fastq.gz”) for each sample were obtained.

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