Mass spectrometry (MS) analysis

QY Qiujing Yan
LZ Liang Zhao
WW Wenda Wang
XP Xiong Pi
GH Guangye Han
JW Jie Wang
LC Lingpeng Cheng
YH Yi-Kun He
TK Tingyun Kuang
XQ Xiaochun Qin
SS Sen-Fang Sui
JS Jian-Ren Shen
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The single bands of protein subunits were obtained by SDS-PAGE electrophoresis and cut out, subjected to mass analysis using a matrix-assisted laser desorption ionization time-of-flight mass spectrometer MALDI-TOF/TOF (UltraflextremeTM, Brucker, Germany). The protein samples were first treated with DTT reduction and alkylation with iodoacetamide, followed by treatment with trypsin overnight51. The peptides obtained after enzymatic hydrolysis were desalted by a C18 ZipTip and mixed with the matrix-cyano-4-hydroxycinnamic acid, followed by mass analysis. Database searches were performed through the MS/MS Ion Search page at www.matrixscience.com. The protein identification results were obtained based on the primary mass spectrometry and the secondary mass spectra of the peptides produced after enzymatic hydrolysis. The database used for the identification is NCBIProt, swissprot.

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