Optical mapping

JT Jun Takayama
ST Shu Tadaka
KY Kenji Yano
FK Fumiki Katsuoka
CG Chinatsu Gocho
TF Takamitsu Funayama
SM Satoshi Makino
YO Yasunobu Okamura
AK Atsuo Kikuchi
SS Sachiyo Sugimoto
JK Junko Kawashima
AO Akihito Otsuki
MS Mika Sakurai-Yageta
JY Jun Yasuda
SK Shigeo Kure
KK Kengo Kinoshita
MY Masayuki Yamamoto
GT Gen Tamiya
request Request a Protocol
ask Ask a question
Favorite

Optical mapping was performed using the Irys system or Saphyr system, according to the manufacturer’s protocol (Bionano Genomics; San Diego, CA). For sample jg1a, high-molecular-weight genomic DNA from nucleated blood cells was nicked using the endonucleases Nt.BspQI or Nb.BssSI and then labeled with fluorophore-tagged nucleotides. The labeled DNA was imaged on the Irys system. For samples jg1b and jg1c, high-molecular-weight genomic DNA from nucleated blood cells was labeled using direct labeling and staining (DLS) chemistry. The labeled DNA was imaged on the Saphyr system.

Do you have any questions about this protocol?

Post your question to gather feedback from the community. We will also invite the authors of this article to respond.

post Post a Question
0 Q&A