Binding free energy calculation was done in g_mmpbsa tool [51] for the last 10 ns of the production run. Results are calculated as average with standard deviation. The peptide aptamer in the aptamer–RBD complex is considered as a ligand.
Do you have any questions about this protocol?
Post your question to gather feedback from the community. We will also invite the authors of this article to respond.
 Tips for asking effective questions
+ Description
Write a detailed description. Include all information that will help others answer your question including experimental processes, conditions, and relevant images.