Gene expression analysis (qRT-PCR)

KR Kevin Robe
FG Fei Gao
PB Pauline Bonillo
NT Nicolas Tissot
FG Frédéric Gaymard
PF Pierre Fourcroy
EI Esther Izquierdo
CD Christian Dubos
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Total RNAs was extracted using the Tri-Reagent (Molecular Research Center) method. Briefly, each sample was homogenized in 1 ml Tri-Reagent solution mixed with 160 μl of chloroform:isoamyl alcohol (24:1). Following centrifugation (10 min, 13.000 rpm, 4°C) total RNAs present in the aqueous phase were precipitated by the addition of 400 μl of isopropanol followed by another centrifugation. Pellets were then washed twice with ethanol 70% and dried prior resuspension in RNAse-free water. For each sample, 1 μg of total RNA treated with DNase was reverse transcribed into cDNA using the RevertAid kit (Thermo scientific). Quantitative PCR analyses were carried out using a LightCycler® 480 (Roche) and the LC480-SYBR-Green master I reaction mix (Roche). PP2AA3 (PROTEIN PHOSPHATASE 2A SUBUNIT A3) was used as reference gene [62]. Expression levels were calculated using the comparative threshold cycle method. All the primers used are described S2 Table.

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