For all in vivo histology experiments, animals were killed via lethal overdose with FatalPlus (Vortech Pharma) followed by transcardial perfusion with saline followed by 4% paraformaldehyde, brains removed, and postfixed for 12 hours. Brains were sectioned coronally at 45 μm thickness on a cryostat (Leica) and mounted onto SuperFrost charged slides (Fisherbrand) for subsequent staining procedures.
Mast cells were visualized using staining with acidic Toluidine Blue (Sigma; 0.5% in 60% ethanol; pH = 2.0; 10 minute stain incubation) as detailed in7, and then tissue was cleared with ascending ethanol, defatted with xylenes, and coverslipped using Permount.
Brain sections were rinsed twice with PBS, permeabilized with 0.3% H202 in 50% methanol, blocked with 5–10% bovine serum albumin or normal goat serum in PBS + 0.4% Triton X, and incubated with primary antisera against the pan-microglia marker, Iba1 (Wako cat#019-19741 1:1000) for 24 hours at 4 °C. Sections were extensively washed, and processed with biotinylated secondary antibodies (Vector), avidin-biotin complex (Vector), and reacted with Nickel-diaminobenzidine in 0.125 M sodium acetate to visualize chromogen for IHC. Stained sections were coverslipped with DPX mounting medium.
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