Total proteins were extracted from HCC tissue samples or cells using RIPA lysis buffer (Beyotime Institute of Biotechnology, Shanghai, China) containing protease inhibitors. The protein concentrations were determined using a BCA Protein Assay Kit (Beyotime Institute of Biotechnology), and proteins were separated on polyacrylamide gels and transferred to polyvinylidene fluoride (PVDF) membranes. Then, membranes were blocked with 5% skimmed milk for 2 h at room temperature and incubated with primary antibodies overnight at 4°C. After washing with TBST three times, the membranes were incubated with secondary antibodies conjugated to HRP (Cell Signaling Technology) for 2 h at room temperature. Finally, proteins were visualized using an ECL Plus kit (Bio-Rad, Hercules, CA, USA). The relative protein expression was analyzed using Quantity One software (Bio-Rad).
To examine the half-life of TGFR-1, Cycloheximide (CHX) Chase assay was performed. SK-Hep1-shRNA/USP4 cells or SK-Hep1-USP4 cells were treated with protein synthesis inhibitor CHX (100 µg/mL) for the indicated times. Then, proteins were extracted and Western blotting was performed.
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