RNA isolation and quantitative real-time PCR

SK Srinivasa P. Kolapalli
RS Rinku Sahu
NC Nishant R. Chauhan
KJ Kautilya K. Jena
SM Subhash Mehto
SD Saroj K. Das
AJ Ashish Jain
MR Manaswini Rout
RD Rupesh Dash
RS Rajeeb K. Swain
DL David Y. Lee
TR Tor E. Rusten
SC Santosh Chauhan
SC Swati Chauhan
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RNA isolation and qRT-PCR was performed as previously described (38). Briefly, total RNA was extracted using Trizol reagent according to the manufacturer's protocols (Invitrogen). 1 μg of RNA was used for reverse transcription using a high capacity DNA reverse transcription kit (Applied Biosystems Cat No: 4368813), and qRT-PCR was performed using Power SYBR green PCR master mix (Applied Biosystems #4367659) according to manufacturer's protocols. The fold-change in expression was calculated by the 2–ΔΔCt methods. mRNA expression profiles were normalized to levels of housekeeping gene Glyceraldehyde 3-phosphate dehydrogenase (GAPDH) in each sample The primers used in qRT-PCR are listed in supplementary material and methods.

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