The differentially expressed genes (DEGs) between H1 and the four derived cell lines were identified using Cufflinks (Version 2.2.1) [71]. Specifically, the DEGs were defined as genes showing at least two-fold changes in expression levels and an FDR < 0.01. In total, 3425, 6262, 6968 and 5062 DEGs were obtained between H1 and ME, TBL, MSC and NPC, respectively.
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