Ileum specimens were collected from mice on day 15 (n = 6 mice per group). Specimens were rinsed in cold saline solution and immediately fixed in 10% phosphate-buffered formalin. The tissue was then embedded in paraffin, sectioned transversely and stained with H&E. The histology slides were scanned using Zeiss Axioscan.Z1. Then, villus height, villus width, crypt depth, and crypt numbers were counted and mucosal injury scores were assigned [45] using Zen 2 software (Zeiss Company, Thornwood, NY). To briefly summarize: grade 0 = normal mucosa; grade 1 = development of subepithelial spaces near the tips of the villi with capillary congestion; grade 2 = extension of the subepithelial space with moderate epithelial lifting from the lamina propria; grade 3 = significant epithelial lifting along the length of the villi with a few denuded villus tips; grade 4 = denuded villi with exposed lamina propria, dilated capillaries and reduced crypt death and counts; and grade 5 = disintegration of the lamina propria, hemorrhage, and ulceration.
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