Semi-quantitative reverse transcriptase PCR (RT-PCR) and quantitative real-time PCR (qPCR)

LS Lianghua Shen
SL Sijia Lei
BZ Bin Zhang
SL Shuaiguang Li
LH Luyuan Huang
AC Alexander Czachor
MB Mason Breitzig
YG Yuman Gao
MH Meiyan Huang
XM Xuemei Mo
QZ Qing Zheng
HS Hanxiao Sun
FW Feng Wang
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RT-PCR and qPCR are described in our previous work 17. Total RNA was extracted from cells using Trizol reagent (Invitrogen, USA) as described by the manufacturer. The RNA was then converted to cDNA via reverse transcriptase using a cDNA synthesis kit (TaKaRa, Japan) according to the manufacturer's instructions. For RT-PCR, 1 μL of the reverse transcription product was amplified by Ex Taq (TaKaRa, Japan) using primers pcDNA3.1-T7-FP, Axl-E9-FP, and Axl-E11-RP (Table S1). The inclusion and exclusion forms of exon10 of Axl were detected by RT-PCR. The positions of these two forms are depicted on 2% agarose gels. Image J software was then used for grayscale analysis by the ratio of exon skipping means the grayscale value of Axl-L/ Axl-S. For qPCR, synthesized cDNA was used in qPCR experiments with the SYBR Green mix (TaKaRa, Japan) and analyzed with a Bio-Rad Real-Time detection system (Bio-Rad, USA). The relative expression of target genes was calculated and normalized using the 2-ΔΔCt method. The primers are shown in table S1.

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