Two different methods were used to determine whether APOBEC-induced mutations were clustered, one based on a Poisson analysis (the P-method) and using a negative binomial distribution (the B-method) (18). The details of these methods are in the text above and in SI Appendix.
Do you have any questions about this protocol?
Post your question to gather feedback from the community. We will also invite the authors of this article to respond.