2.7. RSV qRT-PCR assay

FS Franco Maximiliano Salinas
AN Antonela Díaz Nebreda
LV Luciana Vázquez
MG María Virginia Gentilini
VM Victoria Marini
MB Martina Benedetti
MJ Mercedes Soledad Nabaes Jodar
MV Mariana Viegas
CS Carina Shayo
CB Carlos Alberto Bueno
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At the indicated time points p.i./compound incubation, total RNAs were extracted from supernatants, after freezing and thawing the infected cells, with QIAamp® Viral RNA Mini Kit (QIAGEN, USA) according to the manufacturer's instructions. The first-strand cDNA synthesis was performed with SuperScript III Reverse Transcriptase (SSIII) (Thermo Fisher Scientific) following manufacturer's instructions and a primer which recognizes the M gene of the negative-strand RSV RNA genome. Then a quantitative PCR (qPCR) with primers and probe targeting the M gene previously reported (Kim et al., 2011) was performed with SensiFAST™ Probe No-ROX Kit (Bioline) following manufacturer's instructions. RNase P DNA was used as a reference gene and was amplified with the corresponding gene specific primers and probe and the qPCR was performed with SensiFAST™ Probe No-ROX Kit (Bioline). Average viral RNA Cq values were normalized to the average Cq values of RNase P and ΔΔCt based fold-change calculations were set relative to untreated-virus infected cells at 6 h p.i.

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