Measure to evaluate the concordance between FF and FFPE samples

LB Louise de Schaetzen van Brienen
ML Maarten Larmuseau
KE Kim Van der Eecken
FR Frederic De Ryck
PR Pauline Robbe
AS Anna Schuh
JF Jan Fostier
PO Piet Ost
KM Kathleen Marchal
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The overlap between reported calls in matching FF and FFPE samples is reported in terms of sensitivity and precision using the variants obtained in the FF sample as gold standard. A somatic variant was considered present in both samples if in both samples the variant was located at an identical chromosomal position, and if the reference and the alternative alleles were identical.

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