Under no immune selection, the probability of glycosylation at site i was calculated by finding the probability of having the Asn−X−Ser/Thr sequon [39] (where X is not proline) assuming site independence. This assumption is necessary and implicit as DMS data only consider single residue changes on a specific background HA protein. In particular, these data do not consider epistatic interactions between residues, including any such interactions that would enrich Asn−X−Ser/Thr sequons. Therefore, the estimate of the glycosylation probability at site i is
Do you have any questions about this protocol?
Post your question to gather feedback from the community. We will also invite the authors of this article to respond.
Tips for asking effective questions
+ Description
Write a detailed description. Include all information that will help others answer your question including experimental processes, conditions, and relevant images.