2.9. Inhibition assay

OA Olga Abian
DO David Ortega-Alarcon
AJ Ana Jimenez-Alesanco
LC Laura Ceballos-Laita
SV Sonia Vega
HR Hugh T. Reyburn
BR Bruno Rizzuti
AV Adrian Velazquez-Campoy
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To assess the in vitro inhibition potency of the selected compounds, the inhibition constants were estimated from the experimental curves. Inhibition curves were obtained by measuring the enzyme activity as a function of compound concentration: monitoring the substrate fluorescence emission as a function of time, fixing the enzyme concentration at 2 μM, the substrate concentration at 20 μM, and varying the compound concentration from 0 to 125 μM, while maintaining constant the percentage of DMSO. The enzymatic activity was quantitated as the initial slope of the substrate fluorescence emission time curve, and was plotted as a function of compound concentration. Non-linear regression analysis employing a simple inhibition model allowed us to estimate the apparent inhibition constant for both compounds, according to this equation:

where v is the initial slope of the enzymatic activity trace at a (free) compound concentration [I], Km is the Michaelis-Menten constant for the enzyme-substrate interaction, [S] is the substrate concentration, and Ki app is the apparent inhibition constant for the compound. If the inhibitor acts through a purely competitive mechanism, the previous equation can be substituted by the following one:

where Ki is the intrinsic (i.e., substrate concentration-independent) inhibition constant.

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