Reverse transcription-quantitative polymerase chain reaction (RT-qPCR)

JY Jie Yuan
HM Hongdan Mo
JL Jing Luo
SZ Suhong Zhao
SL Shuang Liang
YJ Yu Jiang
MZ Maomao Zhang
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Total RNA was extracted using TRIzol reagent (Life Technologies; Thermo Fisher Scientific, Inc., Waltham, MA, USA), and the RNA concentration was determined using a UV spectrophotometer. RT of total RNA to cDNA was performed using an AccuPower RocketScript RT PreMix kit (Bioneer Corporation, Daejeon, Korea), following the manufacturer's protocol. The thermal cycle profile for RT was set for primer annealing at 37°C for 10 min, cDNA synthesis at 50°C for 60 min and heat inactivation at 95°C for 5 min. qPCR was performed using an AccuPower 2× GreenStar qPCR Master Mix kit (Bioneer Corporation) in a Bio-Rad iQ5 optical module (Bio-Rad Laboratories, Inc., Hercules, CA, USA). qPCR was performed under the following conditions: 95°C for 10 min, and 40 cycles of denaturation at 95°C for 10 sec and annealing at 58°C for 20 sec. Primer sequences were: GRP78 forward, 5′-TGACTATGAAGAATCCCAAGA-3′ and reverse, 5′-TATCAACATCCAGTTCCACC-3′); GAPDH forward, 5′-GTTCAACGGCACAGTCAAGG-3′ and reverse, 5′-CACCAGTGGATGCAGGGAT-3′. 2−ΔΔCq was calculated for every sample, and the mRNA expression levels were determined using the 2−ΔΔCq method (14) and normalized to GAPDH.

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