Quantitative real-time reverse transcriptase-polymerase chain reaction (RT-PCR)

MN Masatoshi Narikawa
MU Masanari Umemura
RT Ryo Tanaka
MH Mayu Hikichi
AN Akane Nagasako
TF Takayuki Fujita
UY Utako Yokoyama
TI Tomoaki Ishigami
KK Kazuo Kimura
KT Kouichi Tamura
YI Yoshihiro Ishikawa
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Isolation of total RNA, generation of cDNA and RT-PCR analysis were performed as previously described [18]. The sequences of the specific primers were as follows: IL-6 (forward, 5′- CCAGGAGCCCAGCTATGAA -3′; reverse, 5′-TTCTGCCAGTGCCTC TTTG -3′), TGF-β (forward, 5′-TACCTGAACCCGTGTTG CTC -3′; reverse, 5′-CCGGTAGTGAACCCGTTGAT -3′), ACTA2 (forward, 5′- ATTGCCGACCGAA TGCAGA -3′; reverse, 5′- ATGGAGCCACCGATCC AGAC -3′), MMP1 (forward, 5′-CTCTGGAGTAATGTCACACCTCT -3′; reverse, 5′-TGTTGGTCCACCTTTCATC TTC -3′), col1A1 (forward, 5′- CCCGGGTTTCAGAG ACAACTTC -3′; reverse, 5′- TCCACATGCTTTATTCCAGCAATC -3′), MMP-2 (forward, 5’- GATACCCCTTTGA CGGTAAGGA -3’; reverse, 5’- CCTTCTCCCAAGG TCCATAGC -3’), MMP-9 (forward, 5’- TGTACCGCTATGGTTACACTCG-3’; reverse, 5’- GGCAGGGACAGTTGCTTCT-3’) and 18S (forward, 5′- GTAACCCGTTGAACCCCATT-3′; reverse, 5′- CCATCCAATCGGTAG TAGCG-3′). PCR consisted of an initial cycle of 95°C for 30 sec and then 40 cycles, each consisting of denaturation at 95°C for 5 sec, followed by annealing and primer extension at 60°C for 30 sec. Melting curve analysis was conducted from 60°C to 95°C, with a heating rate of 0.3°C per sec. The abundance of each gene was determined relative to that of the 18S transcript.

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