Simulation methodology

DM D. L. Medlin
NY N. Yang
CS C. D. Spataru
LH L. M. Hale
YM Y. Mishin
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First-principles DFT calculations were performed using projector-augmented wave pseudopotentials as implemented in the electronic structure Vienna Ab initio Simulation Package65,66. Gamma-surface calculations were performed using 6-quintuplet slabs, with changes in total energy obtained after translating the upper 3 quintuplets parallel to the hexagonal basal plane. The translation vector t sampled the lateral area of the conventional unit cell on a uniform 10 × 10 mesh. After each translation, the atomic positions were relaxed in the direction normal to the fault. The lateral lattice vectors (in Cartesian coordinates) a1 = a(1, 0, 0) and a2=(a2)(3,1,0) and the initial atomic positions were obtained for the lattice parameter a computed by relaxing forces and stresses for bulk Bi2Te3. Convergence with respect to the Brillouin zone sampling was achieved employing uniform Monkhorst–Pack k-point meshes with sizes up to 7 × 7 × 1. A smooth function γ(t) was obtained by interpolating between the measured points using a multiquadric radial basis function. Several exchange-correlation functionals were employed, namely, LDA40, optPBE-vdW and optB88-vdW4144, and DFT-D245. The lattice parameters and elastic constants obtained with these functionals are summarized in Supplementary Table 1 and are in good agreement with previous DFT calculations67.

In the SDVPN model used here, the disregistry function δi(x) was discretized on a mesh {xα}α = 1,...,N of N = 300 points with the spacing Δx=a33. The total dislocation energy is Etotal = Eelastic + Emisfit, where the elastic strain energy Eelastic depends on the energy coefficients Kij, which in turn depend on the elastic constants Cij. The misfit energy Emisfit=α=1Nγδi(xα)Δx was obtained from the DFT gamma-surface. The equilibrium disregistry δi(xα) was found by numerical minimization of Etotal under appropriate boundary conditions. As the initial guess, we used the arctangent disregistry function predicted by the classical Peierls–Nabarro model. A continuous disregistry curve was obtained by smooth interpolation between the xα points. The calculations were performed separately for each of the DFT functionals. Further technical details of the SDVPN calculations can be found in the Supplementary Note 1.

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