Data Pre-processing

AW Adrian Wong
WL Wutao Lou
KH Kin-fai Ho
BY Brian Ka-fung Yiu
SL Shi Lin
WC Winnie Chiu-wing Chu
JA Jill Abrigo
DL Dustin Lee
BL Bonnie Yin-ka Lam
LA Lisa Wing-chi Au
YS Yannie Oi-yan Soo
AL Alexander Yuk-lun Lau
TK Timothy Chi-yui Kwok
TL Thomas Wai-hong Leung
LL Linda Chui-wa Lam
KH Ko Ho
VM Vincent Chung-tong Mok
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MRI markers including WMH volume, lacune and MTLA were measured. The WMH was defined as hyperintensity as reflected on FLAIR image, according to the STRIVE standard23 and automatically segmented with manual correction where appropriate. WMH segmentation was performed based on a validated pipeline - coarse-to-fine detection of WMH using co-registered T1W and FLAIR24. Lacunae were defined according to the STRIVE standard and segmented in T1W images23. The number was counted as isolated regions automatically. MTLA was visually rated on T1W images using the Schelten’s scale25. fMRI imaging data were pre-processed using Statistical Parametric Mapping software version 12 (http://www.fil.ion.ucl.ac.uk/spm/). The first 10 volumes of each participant were discarded to allow for T1W equilibration effects. Then the functional images were slice-time corrected for timing offsets between different slices and realigned to the first image to correct for head motion between scans. The high-resolution T1W image was then co-registered to the mean of the corrected functional images. In order to improve the brain tissues segmentation in aging, a multi-channel segmentation approach in SPM 12 was used. The FLAIR image was coregistered to the T1W image, and the coregistered T1W and FLAIR images were combined underwent multi-channel segmentation to extract different tissues including gray matter, white matter and cerebrospinal fluid. A study-specific template was created using the DARTEL toolbox26. The functional images were then spatially normalized to the standard MNI space by using the nonlinear normalization parameters estimated by the DARTEL toolbox, resampled to 3 × 3 × 3 mm3 and spatially smoothed with a 6 mm full-width half-maximum Gaussian kernel. Finally, additional preprocessing steps were implemented to the normalized function images to eliminate the effect of low-frequency drifts and physiological noise, which included removing linear trends, temporally band-pass filtering (0.01–0.1 Hz) and regressing out several nuisance signals (six head-motion profiles, the averaged signals from white matter, cerebrospinal fluid, and the whole brain and the first derivatives thereof)27.

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