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Closest-gene method

JM Jill E. Moore
HP Henry E. Pratt
MP Michael J. Purcaro
ZW Zhiping Weng
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We identified the closest TSS to each cCRE-ELS using bedtools closest and GENCODE V19 TSS annotations. We compared two options: use of the full set of GENCODE TSSs (with problematic annotations removed) or use of only protein-coding GENCODE TSSs. To evaluate performance, we calculated the overall precision and recall for each BENGI dataset (Script: Closest-Gene-Method.sh).

Copyright and License information: The Author(s). ©2020
Open Access This article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.

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