2.5. Functional enrichment analysis

MO Monica Oldani
MF Marco Fabbri
PM Pasquale Melchioretto
GC Giulia Callegaro
PF Paola Fusi
LG Laura Gribaldo
MF Matilde Forcella
CU Chiara Urani
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Differentially Expressed Genes (DEGs), namely up-regulated and down-regulated genes, were analyzed with WebGestalt (WEB-based Gene SeT AnaLysis Toolkit, http://www.webgestalt.org), to identify genes with similar functions (Wang et al., 2013). Enrichment analyses were conducted studying the Gene Ontology categories with a p-value lower than 0.05 in a hypergeometric test. The method used for enrichment analysis was the Over-Representation Analysis (ORA). WebGestalt gene tables summarization and volcano plots were used to summarize and visualize the enrichment results.

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