Improve Research Reproducibility A Bio-protocol resource
- Home
- Protocols
-
Request a Protocol
Ask a
question
Favorite
The paired-end reads generated using an Illimina HiSeq 2000 platform were assembled by SOAP de novo (Li et al., 2010). Coding sequences were predicted by Glimmer 3.0 (Delcher et al., 1999). Functional annotation was based on BLASTp, with the KEGG, Swiss-Prot, COG, and non-redundant GenBank CDS databases (Altschul et al., 1997; Kanehisa and Goto, 2000; Muller et al., 2010).
Copyright and License information: ©2016 Ren, Palusiak, Wang, Wang, Li, Wei, Kong, Rozalski, Yao and Wang.
This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) or licensor are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
Do you have any questions about this protocol?
Post your question to gather feedback from the community. We will also invite the authors of this article to respond.
Post a Question0 Q&A
