Surface plasmon resonance studies

SP Swechha M. Pokharel
NS Niraj K. Shil
JG Jeevan B. GC
ZC Zachary T. Colburn
ST Su-Yu Tsai
JS Jesus A. Segovia
TC Te-Hung Chang
SB Smarajit Bandyopadhyay
SN Senthil Natesan
JJ Jonathan C. R. Jones
SB Santanu Bose
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To study biomolecular interaction between integrin and 25HC in real-time, SPR was performed using a Biacore 3000 instrument (GE Healthcare, Piscataway, New Jersey) according to the manufacturer’s instructions. Purified human αvβ3 integrin protein (Yo proteins AB, Huddinge, Sweden) was covalently immobilized on a flow cell of CM5 chip (carboxy-methylated dextran coated) in 10 mM sodium acetate buffer, pH 4.0, using EDC/NHS amine coupling chemistry at 25 °C. The unused dextran surface was then inactivated by injecting 1 M Ethanolamine, pH 8.5. Similarly, the blank control flow cell was simultaneously activated and inactivated without the protein for background subtraction of any non-specific response. For kinetic analyses, increasing concentrations of 25HC (0 nM, 16 nM, 40 nM, 160 nM, 640 nM, 1.6 µM) in the running buffer HBS-P (10 mM HEPES, 0.15 M NaCl, 0.005% polysorbate 20, pH 7.4) with 1% DMSO were injected at a flow rate of 20 μl/min for 150 s. Following dissociation, the chip surface was regenerated with the running buffer. The background subtracted SPR sensorgrams were quantitatively evaluated to determine KD (apparent affinity constant) by using the Biacore 3000 Evaluation Software (GE Healthcare) and the Langmuir 1:1 binding model.

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