Sequencing and phylogenetic analysis

IM Idris Mhaidi
SK Sofia El Kacem
MK Mouad Ait Kbaich
AH Adil El Hamouchi
MS M’hammed Sarih
KA Khadija Akarid
ML Meryem Lemrani
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The obtained 350-bp ITS1-PCR products were purified using exonuclease I/shrimp alkaline phosphatase (GE Healthcare, US). The sequencing reaction was performed in both directions using BigDye Terminator version 3.1 (Applied Biosystems, Foster City, CA, USA). The resulting forward and reverse sequences were aligned. A total of nine partial ITS1 DNA sequences, in addition to the studied sequences, were selected from GenBank, including five sequences from L. infantum (AJ634361, GQ367486, KX664452, AJ634339 and AJ634355), four sequences from L. tropica (KP202104, KU194923, KX599337 and KP202102) and one sequence from L. major (AJ000310). Phylogenetic analysis was performed with MEGA version 7 software using the neighbour-joining and Kimura 2-parameter models. The tree topology was supported by 1000 bootstrap replicates.

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