4.17. Analysis of Microarray Datasets from GEO Database

VS Vinod Vijay Subhash
BL Benoit Ladoux
request Request a Protocol
ask Ask a question
Favorite

A microarray dataset for adenocarcinoma gastric cancer, downloaded from GEO with accession number (GSE13861) containing healthy (n = 19), intestinal-type (n = 20) and diffuse-type (n = 31) samples, was utilized to analyze the levels of FBXW5 mRNA expression across the three types of gastric tissues. A second independent microarray dataset of gastric cancer with accession number (GSE103236) containing pairwise adjacent healthy (n = 9) and tumor tissues (n = 8) was employed to evaluate the levels of FBXW5 and ROCK1 mRNA expression across the three distinct tissues: Adjacent healthy, early tumor (n = 6), or advanced tumor (n = 3). In addition, GESA analysis was performed between high-FBXW5 and low-FBXW5 samples to explore the correlations between FBXW5 expression and genes involved in RhoA signaling, metastasis and advanced tumors.

Do you have any questions about this protocol?

Post your question to gather feedback from the community. We will also invite the authors of this article to respond.

post Post a Question
0 Q&A