We used Gencode v19 (July 2013; ENSEMBL 74, 75) as the latest release with annotations based on the GRCh37/hg19 genome version. For mapping genes, we used a more recent version, Gencode v25, with annotations on GRCh38/hg38 and the corresponding mappings to GRCh37/hg19 already provided. These mappings are based on the UCSC genome browser LiftOver [40] at UCSC file gencode.v25lift37.annotation.gtf.
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