Data collection and structure determination and analysis

DW Daichao Wu
MG Ming Guo
MP Michael A. Philips
LQ Lingzhi Qu
LJ Longying Jiang
JL Jun Li
XC Xiaojuan Chen
ZC Zhuchu Chen
LC Lin Chen
YC Yongheng Chen
request Request a Protocol
ask Ask a question
Favorite

Data were collected at the Shanghai Synchrotron Radiation Facility (SSRF), beamline BL17U and reduced using HKL3000. Structure determination was carried out as described previously [31, 32]. Initial phase determination was performed by molecular replacement with Phaser from the CCP4 package, using the previously solved FGFR4/Ponatinib structure (PDB code 4TYJ) as the search model [20]. The structure was refined using Phenix.refine and Coot from the Phenix package. The statistics of the crystallographic analysis are presented in Table 1. Graphical representations of structure were prepared using PyMol. The kinase domain sequences of 4 FGFRs were aligned by Clustal X software [33]. The diagram of protein-ligand interaction was generated using PDBsum (www.ebi.ac.uk/thornton-srv/databases/pdbsum).

Coordinates and structure factors have been deposited in the Protein Data Bank with accession number 5JKG.

Do you have any questions about this protocol?

Post your question to gather feedback from the community. We will also invite the authors of this article to respond.

0/150

tip Tips for asking effective questions

+ Description

Write a detailed description. Include all information that will help others answer your question including experimental processes, conditions, and relevant images.

post Post a Question
0 Q&A