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Quantitative analysis of mouse reads in human genome reference
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A BED file defining the captured region of SureSelect Human All Exon V5 has been obtained from the Agilent website and counted all the read per captured region from BAM files using GATK4 CollectReadCounts (ver. 4.1.1.0). These tables are annotated with the NCBI RefSeq Gene database, and the read counts were grouped by gene using an in-house python script to count the number of reads per gene.
Copyright and License information: The Author(s). ©2019
Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.
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