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WB W. G. Branton
JL J. Q. Lu
MS M. G. Surette
RH R. A. Holt
JL J. Lind
JL J. D. Laman
CP C. Power
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Gene ontology analysis was performed using DAVID Bioinformatic resources 6.7 Functional Annotation45,46 (http://david.abcc.ncifcrf.gov/). Gene network analysis of transcripts identified by Nanostring shown to be correlated with PGN immunostaining was performed using the network tool in Ingenuity pathway analysis (Ingenuity systems, www.ingenuity.com). Alignment of RNAseq-derived bacterial sequences was performed (Novoalign)23.

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