Quantification of gene expression at exon level

CS Charles A. Steward
JR Jolien Roovers
MS Marie-Marthe Suner
JG Jose M. Gonzalez
BU Barbara Uszczynska-Ratajczak
DP Dmitri Pervouchine
SF Stephen Fitzgerald
MV Margarida Viola
HS Hannah Stamberger
FH Fadi F. Hamdan
BC Berten Ceulemans
PL Patricia Leroy
CN Caroline Nava
AL Anne Lepine
ET Electra Tapanari
DK Don Keiller
SA Stephen Abbs
AS Alba Sanchis-Juan
DG Detelina Grozeva
AR Anthony S. Rogers
MD Mark Diekhans
RG Roderic Guigó
RP Robert Petryszak
BM Berge A. Minassian
GC Gianpiero Cavalleri
DV Dimitrios Vitsios
SP Slavé Petrovski
JH Jennifer Harrow
PF Paul Flicek
FR F. Lucy Raymond
NL Nicholas J. Lench
PJ Peter De Jonghe
JM Jonathan M. Mudge
SW Sarah Weckhuysen
SS Sanjay M. Sisodiya
AF Adam Frankish
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Raw reads from Jaffe et al.,19 were available via study accession SRP045638. The 36 paired-end libraries were analysed using the iRAP pipeline (https://github.com/nunofonseca/irap). First, raw reads in the original FASTQ files underwent quality assessment and filtering.60 They were then aligned against the GRCh38 genome reference using Tophat2,61 with the option: ‘–min-intron-length 6’.

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