We predicted orthologous proteins for our R. toruloides gene models in H. sapiens, D. melanogaster, C. elegans, A. thaliana, C. reinhartii, S. cerevisiae, and 16 other fungi with the orthomcl software suite version 2.0.9 (Li et al., 2003). See Supplementary file 1 for a full list of ortholog groups and details on the genomes used in this analysis.
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