Improve Research Reproducibility A Bio-protocol resource
- Home
- Protocols
-
Request a Protocol
Ask a
question
Favorite
To inspect the complement of SSRs and provide strategies for the genome sequencing or assembly of D. cambodiana, an appropriate repetitive sequence library was constructed for predicting repeat sequences using LTR_FINDER with the de novo data described earlier [30]. Then, TRE and RepeatMasker 3.3.0 were used to search for homologous tandem or interspersed repeats, respectively [31, 32]. SSR motifs were determined using SciRoKo [33].
Copyright and License information: ©2018 Ding et al
This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
Do you have any questions about this protocol?
Post your question to gather feedback from the community. We will also invite the authors of this article to respond.
Post a Question0 Q&A
