GWAS Catalog ancestry analysis

JM Joannella Morales
DW Danielle Welter
EB Emily H. Bowler
MC Maria Cerezo
LH Laura W. Harris
AM Aoife C. McMahon
PH Peggy Hall
HJ Heather A. Junkins
AM Annalisa Milano
EH Emma Hastings
CM Cinzia Malangone
AB Annalisa Buniello
TB Tony Burdett
PF Paul Flicek
HP Helen Parkinson
FC Fiona Cunningham
LH Lucia A. Hindorff
JM Jacqueline A. L. MacArthur
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To determine the distribution of individuals, associations and traits by ancestry category, we first downloaded all Catalog data in tabular form [16]. All data included in these analyses were curated from GWA studies published between 2005 and the end of 2016, with a release date of July 18 2017. The data can be found on the Catalog’s FTP site [27] (gwas-catalog-associations_ontology-annotated.tsv, gwas-catalog-ancestry.tsv, gwas-catalog-studies_ontology-associated.tsv, and gwas-efo-trait-mappings.tsv).

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