2.2. Annotation of M. sexta serpin genes

ML Miao Li
JC Jayne M. Christen
ND Neal T. Dittmer
XC Xiaolong Cao
XZ Xiufeng Zhang
HJ Haobo Jiang
MK Michael R. Kanost
ask Ask a question
Favorite

Amino acid sequences of previously identified serpins from M. sexta (serpins 1–7, 9, and 13) and B. mori (serpins 1–34) (Zou et al., 2009) were used as queries to search the M. sexta genome assembly 1.0 (http://agripestbase.org/manduca/) using the TBLASTN algorithm with default settings. Amino acid sequences of the newly identified serpins were downloaded from ManducaBase and improved by comparing with Manduca RNA-seq Oases and Trinity Assemblies 3.0 (Cao and Jiang, 2015). The corresponding serpin genes were corrected and annotated using WebApollo as part of the development of M. sexta Official Gene Set 2.0 (Kanost et al., 2016).

Do you have any questions about this protocol?

Post your question to gather feedback from the community. We will also invite the authors of this article to respond.

post Post a Question
0 Q&A