Plasmids and Oligonucleotides

CM Claudia Montagna
GP Gianluca Petris
AC Antonio Casini
GM Giulia Maule
GF Gian Marco Franceschini
IZ Ilaria Zanella
LC Luciano Conti
FA Francesca Arnoldi
OB Oscar R. Burrone
LZ Lorena Zentilin
SZ Serena Zacchigna
MG Mauro Giacca
AC Anna Cereseto
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The sgRNAs for the initial experiments on VSV-G vesicle production were transcribed from a U6 promoter-driven cassette derived from pX330 (a gift from Feng Zhang, Addgene 42230)1 and cloned into the pUC19 plasmid.13 sgRNA oligos were cloned using a double BbsI site inserted before the sgRNA constant portion according to a previously published cloning strategy.1 The Gag-SpCas9 plasmid was obtained through the fusion of the Gag coding sequence with 3×FLAG-SpCas9 encoded by the pX-SpCas9 vector.13 pX-SpCas9 was obtained by removal of an NdeI fragment including the sgRNA expression cassette from pX330 and was used to express SpCas9. MinimalGag-Cas9 was assembled in pCDNA3 by subcloning the SpCas9 coding sequence from pX-SpCas9 and MinimalGag from the Δ-Zwt-p2b plasmid,36 a generous gift from H.G. Gottlinger. Afterward, an additional version of both constructs was obtained by removing, through site-directed mutagenesis, a methionine in the linker peptide derived from pX-Cas9 that led to unfused SpCas9 production (Figure S4).

For VLP and VEsiCas production in BSR-T7/5 cells, sgRNAs were transcribed from a pVAX-T7-sgRNA expression plasmid having a T7 promoter-driven cassette cloned into the pVAX plasmid at the NdeI site. sgRNA oligos were cloned in pVAX-T7-sgRNA using a double BsmBI site inserted before the sgRNA constant portion (a list of oligonucleotides used to clone sgRNAs is available in Table S1). pVAX-T7-sgRNA included a 5′ HDV ribozyme33 designed to cleave the 3′ end of the sgRNA containing the T7 terminator and the ribozyme itself. The Cas9-nickase construct was obtained by inserting the D10A mutation in the SpCas9 coding sequence. The T7 RNA polymerase coding sequence was amplified from the genome of BSR-T7/5 cells and cloned in place of EGFP into the pEGFP-N1 plasmid using the HindIII/XbaI sites to obtain the pKANA-T7-RNA-Pol plasmid. Plasmids were verified by Sanger sequencing. Information regarding relevant plasmid DNA sequences produced for this manuscript can be found in the Supplemental Information.

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