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Promoter motif analysis

GS Gabriele Sulli
AR Amy Rommel
XW Xiaojie Wang
MK Matthew J. Kolar
FP Francesca Puca
AS Alan Saghatelian
MP Maksim V. Plikus
IV Inder M. Verma
SP Satchidananda Panda
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Regions 2000 bp upstream and 100 bp downstream from the TSS of Beclin1, Atg7, Ulk1, and Ulk3 were scanned using the mouse (mm10) genome annotation using the HOMER v4.9.1 findMotifs.pl script with start = −2000 and end = 100, with a log odds score threshold of 5, looking for the motif "GTAGGTCACTGGGTCA" trained on data from34.

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