Recombinant Ebola virus glycoprotein with the mucin-like domain deleted (GPΔmuc), and HIV-1 fusion peptide probe (VRC34-epitope scaffold-FP) and knock-out scaffold probe (VRC34-epitope scaffold-KO) were produced as described previously19,31,32. Proteins were biotinylated and conjugated with streptavidin-APC (GPΔmuc and VRC34-epitope scaffold-FP) or streptavidin-PE (VRC34-epitope scaffold-KO) (Thermo Fisher Scientific), respectively. Recombinant hemagglutinins (A/California/07/2009, A/Solomon Islands/3/2006, and A/Wisconsin/67/2005) were produced as before33 or acquired from BEI Resources (A/Victoria/210/2009, and B/Brisbane/60/2008) and were biotinylated using an EZ-Link Sulfo-NHS-LC-Biotin kit (Thermo Fisher Scientific). Anti-flag FITC antibody was purchased from Sigma-Aldrich (clone M2).
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