Direct correlation (DC) method

RS Ryusuke Sawada
MI Michio Iwata
YT Yasuo Tabei
HY Haruka Yamato
YY Yoshihiro Yamanishi
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To predict inhibitory and activatory interactions, correlation coefficients of chemical treatment signatures and gene knock-down signatures, and correlation coefficients of chemical treatment signatures and gene over-expression signatures were calculated, respectively. Highly correlated compound–protein pairs were considered candidate interaction pairs, and the corresponding correlation coefficients were used as prediction scores.

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