As a plugin to Cytoscape, Molecular Complex Detection (MCODE) (17) was used to detect densely connected regions from the PPI network with the following cutoff values: Degree cutoff, 2; node score cutoff, 0.2; k-core, 2; and maximum depth, 100. Subsequently, based on modules selected from the PPI network, functional enrichment analysis was performed with the criterion of P<0.05.
Do you have any questions about this protocol?
Post your question to gather feedback from the community. We will also invite the authors of this article to respond.